Description Usage Arguments Value Examples
Using REST services, download ELM instances table from elm.eu.org
1 2 | getElmInstances(query = "*", instanceLogic = "true+positive",
taxon = "homo+sapiens")
|
query |
(default: * -all instances-) any query term to search the database for instances |
instanceLogic |
(default: true+positive) other options: true+negative, false+positive, false+negative |
taxon |
(default: homo+sapiens) other option examples: mus+musculus, drosophila+melanogaster etc. |
A GRanges object where seqnames are Uniprot accessions and ranges are the short linear motif locations in the proteins.
1 | elmInst <- getElmInstances('*', 'true+positive', 'homo+sapiens')
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