getElmInstances: getElmInstances
In BIMSBbioinfo/slimR: Short Linear Motif (SLiM) Analysis in the context of human diseases
Description
Usage
Arguments
Value
Examples
Description
Using REST services, download ELM instances table from elm.eu.org
Usage
1
2
getElmInstances(query = "*", instanceLogic = "true+positive",
taxon = "homo+sapiens")
Arguments
query
(default: * -all instances-) any query term to search the
database for instances
instanceLogic
(default: true+positive) other options: true+negative,
false+positive, false+negative
taxon
(default: homo+sapiens) other option examples: mus+musculus,
drosophila+melanogaster etc.
Value
A GRanges object where seqnames are Uniprot accessions and
ranges are the short linear motif locations in the proteins.
Examples
1
elmInst <- getElmInstances('*', 'true+positive', 'homo+sapiens')
BIMSBbioinfo/slimR documentation built on Nov. 4, 2021, 6:48 a.m.
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Description Usage Arguments Value Examples
Description
Using REST services, download ELM instances table from elm.eu.org
Usage
1 2 | getElmInstances(query = "*", instanceLogic = "true+positive",
taxon = "homo+sapiens")
|
Arguments
query |
(default: * -all instances-) any query term to search the database for instances |
instanceLogic |
(default: true+positive) other options: true+negative, false+positive, false+negative |
taxon |
(default: homo+sapiens) other option examples: mus+musculus, drosophila+melanogaster etc. |
Value
A GRanges object where seqnames are Uniprot accessions and ranges are the short linear motif locations in the proteins.
Examples
1 | elmInst <- getElmInstances('*', 'true+positive', 'homo+sapiens')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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