mutateSequence: mutateSequence

In BIMSBbioinfo/slimR: Short Linear Motif (SLiM) Analysis in the context of human diseases

Description

Given a protein sequence, create a mutated copy of the sequence at the desired position and amino acids.

Usage

mutateSequence(sequence, pos, wtAA, mutAA)

Arguments

sequence	Character string of amino acids
pos	The amino acid number (positive integer) at which a mutation should be created
wtAA	One letter code of the Wild-type amino-acid (to double check if the desired mutation matches the actual coordinates of the wild-type sequence)
mutAA	One letter code of the mutant amino acid

Value

A character string where wtAA is replaced with mutAA if the amino-acid at the given position of the given sequence actually has the same amino acid.

Examples

s <- 'AAAAA'
mutateSequence(s, 3, 'A', 'R')

BIMSBbioinfo/slimR documentation built on Nov. 4, 2021, 6:48 a.m.