getPFAM: getPFAM
In BIMSBbioinfo/slimR: Short Linear Motif (SLiM) Analysis in the context of human diseases
Description
Usage
Arguments
Value
Examples
Description
Download pfam domain annotations of complete proteomes
Usage
1
getPFAM(organism = 9606, pfam_version = "Pfam30.0")
Arguments
organism
Organism taxonomy id (e.g. human: 9606)
pfam_version
Version of PFAM release to use: default Pfam30.0. Check
ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/ for available versions.
Value
A Granges object containing the coordinates PFAM domains in protein
sequences
Examples
1
2
3
4
## Not run:
pfam <- getPFAM(organism = 9606, pfam_version = 'Pfam30.0')
## End(Not run)
BIMSBbioinfo/slimR documentation built on Nov. 4, 2021, 6:48 a.m.
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Description Usage Arguments Value Examples
Description
Download pfam domain annotations of complete proteomes
Usage
1 | getPFAM(organism = 9606, pfam_version = "Pfam30.0")
|
Arguments
organism |
Organism taxonomy id (e.g. human: 9606) |
pfam_version |
Version of PFAM release to use: default Pfam30.0. Check ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/ for available versions. |
Value
A Granges object containing the coordinates PFAM domains in protein sequences
Examples
1 2 3 4 | ## Not run:
pfam <- getPFAM(organism = 9606, pfam_version = 'Pfam30.0')
## End(Not run)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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