getHumSavar: getHumSavar
In BIMSBbioinfo/slimR: Short Linear Motif (SLiM) Analysis in the context of human diseases
Description
Usage
Arguments
Value
Examples
Description
Download and parse protein mutation data from UniProt
Usage
1
getHumSavar(outdir)
Arguments
outdir
Path to the folder, where the downloaded file should be saved.
Value
A Granges object containing the coordinates of mutated sites in
proteins
A GRanges object where seqnames are Uniprot sequence accessions and
ranges are the coordinates of the variants.
Examples
1
2
3
4
## Not run:
hs <- getHumSavar(getwd())
## End(Not run)
BIMSBbioinfo/slimR documentation built on Nov. 4, 2021, 6:48 a.m.
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Description Usage Arguments Value Examples
Description
Download and parse protein mutation data from UniProt
Usage
1 | getHumSavar(outdir)
|
Arguments
outdir |
Path to the folder, where the downloaded file should be saved. |
Value
A Granges object containing the coordinates of mutated sites in proteins
A GRanges object where seqnames are Uniprot sequence accessions and ranges are the coordinates of the variants.
Examples
1 2 3 4 | ## Not run:
hs <- getHumSavar(getwd())
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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