PACdataset-class: PACdataset object
In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation
PACdataset-class R Documentation
PACdataset object
Description
PACdataset is an S4 class to represent a poly(A) site list.
PACs are stored as PACdataset for filtering, statistics, and other operations.
Slots
countsa data frame denoting the counts of PAs. Each row is one PA, each column is one experiment.
colDatasample defination. Each row is one experiment, and the column is the sample group.
The number of rows is the same as the column number of the counts slot.
annodetailed annotation information for PAs, with the same row number as the counts slot.
suppa list storing additional data, like stopCodon.
See Also
Other PACdataset functions:
PACds,
annotateByPAS(),
annotatePAC(),
createPACdataset(),
get3UTRAPAds(),
get3UTRAPApd(),
length(),
makeExamplePACds(),
mergePACds(),
normalizePACds(),
plotPACdsStat(),
rbind(),
readPACds(),
removePACdsIP(),
scPACds,
subscript_operator,
summary(),
writePACds()
BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.
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| PACdataset-class | R Documentation |
PACdataset object
Description
PACdataset is an S4 class to represent a poly(A) site list. PACs are stored as PACdataset for filtering, statistics, and other operations.
Slots
countsa data frame denoting the counts of PAs. Each row is one PA, each column is one experiment.
colDatasample defination. Each row is one experiment, and the column is the sample group. The number of rows is the same as the column number of the counts slot.
annodetailed annotation information for PAs, with the same row number as the counts slot.
suppa list storing additional data, like stopCodon.
See Also
Other PACdataset functions:
PACds,
annotateByPAS(),
annotatePAC(),
createPACdataset(),
get3UTRAPAds(),
get3UTRAPApd(),
length(),
makeExamplePACds(),
mergePACds(),
normalizePACds(),
plotPACdsStat(),
rbind(),
readPACds(),
removePACdsIP(),
scPACds,
subscript_operator,
summary(),
writePACds()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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