makeExamplePACds: Make an example PACdataset

In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation

Make an example PACdataset

Description

makeExamplePACds returns an example PACdataset of Arabidopsis.

Usage

makeExamplePACds(n = 1000, seed = 123, forceSparse = F)

Arguments

n	number of PACs.
seed	random seed.
forceSparse	whether to make the counts table as a sparse matrix, otherwise is a normal matrix.

Value

A PACdataset of Arabidopsis with Chr1..Chr5. There are six columns in the anno slot.

See Also

Other PACdataset functions: PACdataset-class, PACds, annotateByPAS(), annotatePAC(), createPACdataset(), get3UTRAPAds(), get3UTRAPApd(), length(), mergePACds(), normalizePACds(), plotPACdsStat(), rbind(), readPACds(), removePACdsIP(), scPACds, subscript_operator, summary(), writePACds()

Examples

makeExamplePACds(n=1000)
makeExamplePACds(n=1000, seed=456, forceSparse=T)

BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.