heatmapResults-class: heatmapResult object
In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation
heatmapResults-class R Documentation
heatmapResult object
Description
heatmapResult is an S4 class to represent a list with padj, value and colData. Normally it is from getHeatmapRes().
Details
The slot of padj or value is a data frame with each row being gene/PA, each column being a condpair or cond (if DEXSeq, then it is the exonUsage matrix).
Slots
padja data frame recording the pvalue of each gene or PA in each condition.
valuea data frame with the same dimension as padj.
colDatastores padj/value matrix's annotation info. Its row names are the column names of the padj matrix.
Normally, there are two columns (cond1 and cond2) in colData.
See Also
Other movRes objects:
movAPASwitchRes-class,
movDEGeneRes-class,
movIndexDiffRes-class,
movRes-class,
movUTRTrendRes-class
BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.
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| heatmapResults-class | R Documentation |
heatmapResult object
Description
heatmapResult is an S4 class to represent a list with padj, value and colData. Normally it is from getHeatmapRes().
Details
The slot of padj or value is a data frame with each row being gene/PA, each column being a condpair or cond (if DEXSeq, then it is the exonUsage matrix).
Slots
padja data frame recording the pvalue of each gene or PA in each condition.
valuea data frame with the same dimension as padj.
colDatastores padj/value matrix's annotation info. Its row names are the column names of the padj matrix. Normally, there are two columns (cond1 and cond2) in colData.
See Also
Other movRes objects:
movAPASwitchRes-class,
movDEGeneRes-class,
movIndexDiffRes-class,
movRes-class,
movUTRTrendRes-class
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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