parseTxdb: Parse TxDb genome annotation
In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation
parseTxdb R Documentation
Parse TxDb genome annotation
Description
parseTxdb parses genome annotation object of TxDb
Usage
parseTxdb(an.txdb)
Arguments
an.txdb
a TxDb object
Value
a parsed genome annotation object, which is a list of three elements (anno.rna, anno.need, anno.frame) and can be used for annotatePAC().
See Also
[parseGff()] to parse a Gff file.
Examples
library(TxDb.Athaliana.BioMart.plantsmart28)
txdbAnno <- parseTxdb(an.txdb=TxDb.Athaliana.BioMart.plantsmart28)
BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.
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| parseTxdb | R Documentation |
Parse TxDb genome annotation
Description
parseTxdb parses genome annotation object of TxDb
Usage
parseTxdb(an.txdb)
Arguments
an.txdb |
a TxDb object |
Value
a parsed genome annotation object, which is a list of three elements (anno.rna, anno.need, anno.frame) and can be used for annotatePAC().
See Also
[parseGff()] to parse a Gff file.
Examples
library(TxDb.Athaliana.BioMart.plantsmart28)
txdbAnno <- parseTxdb(an.txdb=TxDb.Athaliana.BioMart.plantsmart28)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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