movRes-class: movRes object

In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation

movRes object

Description

movRes is an S4 class to represent comparison results among conditions by mov-like funcions (movDEPAC etc.).

Details

All other movRes classes, such as movDEGeneRes, movDEPACRes, movUTRTrendRes, movAPASwitchRes, movIndexDiffRes are generic from movRes. Use movSelect, movStat, and movViz to process the movRes class.

Slots

type

type of the movRes object, such as DEGENE, DEPAC.

method

define the method used for obtaining the movRes object, like DE, DEX, lineartrend, etc.

group

group label of the samples.

conds

a data frame with two columns specifying the two conditions (cond1 and cond2) in the sample group for the comparison analysis. Rownames of the conds data frame are like "cond1.cond2".

pairwise

a list with two elements, padj and value, which are normally obtained from getHeatmapRes().

See Also

movSelect for select movRes, movStat for making statistics, movViz to visualize a gene.

Other movRes objects: heatmapResults-class, movAPASwitchRes-class, movDEGeneRes-class, movIndexDiffRes-class, movUTRTrendRes-class

BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.