BatadaLab/scID: geneset-guided identification of cell types using single cell RNA-seq data

scID is a method for geneset-guided identification of cell types at the level of individual cells, using single cell RNA-seq data. Given a gene expression matrix and a list of marker genes that define the population of interest, scID returns a matching score for each cell and the names of the identified matching cells.

Getting started

Package details

Maintainer
LicenseGPL-3.0
Version0.0.0.9000
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("BatadaLab/scID")
BatadaLab/scID documentation built on Nov. 13, 2018, 4:52 a.m.