BatadaLab/scID: geneset-guided identification of cell types using single cell RNA-seq data

scID is a method for geneset-guided identification of cell types at the level of individual cells, using single cell RNA-seq data. Given a gene expression matrix and a list of marker genes that define the population of interest, scID returns a matching score for each cell and the names of the identified matching cells.

install.packages("remotes")
remotes::install_github("BatadaLab/scID")