Man pages for BatadaLab/scID
geneset-guided identification of cell types using single cell RNA-seq data

calculate_snrFunction to calculate Signal-to-noise Ratio between IN and...
choose_unsupervisedFunction to choose initial IN and OUT populations with linear...
choose_with_negative_markersFunction to select initial OUT population from negative...
choose_with_positive_markersFunction to select initial IN population from necessary...
EM_for_dropout_estimationEstimate Exponential and Normal distribution parameters with...
initialize_prmt_expInitialize vector of paramaters for the mixture model
loadfastFunction to read Gene Expression Matrix from file
scid_match_cellsMain function to get Gene expression matrix and signature...
update_prmt_expUpdate parameters
weight_signatureMain function for estimation of gene ranks
BatadaLab/scID documentation built on April 20, 2018, 8 a.m.