Man pages for BatadaLab/scID
geneset-guided identification of cell types using single cell RNA-seq data
| choose_training_set | Function to choose training IN and OUT populations using... |
| counts_to_cpm | Function to convert gene counts CPM-normalized |
| final_populations | Function to identify matching population from scID score by... |
| find_markers | Function to extract cluster specific genes from reference... |
| gmt_to_markers | Function to read markers from .gmt file format (Genomic... |
| loadfast | Function to read Gene Expression Matrix from file |
| make_heatmap | Function to plot heatmap of average cluster-specific geneset... |
| normalize_gene | Function to row-normalize a numerical vector by the 99th... |
| plot_score_2D | Function to plot heatmap of average cluster-specific geneset... |
| scid_multiclass | Main function to get Gene expression matrix and signature... |
| scID_weight | Main function for estimation of gene ranks |
