choose_training_set: Function to choose training IN and OUT populations using...
In BatadaLab/scID: geneset-guided identification of cell types using single cell RNA-seq data
Description
Usage
Arguments
Value
View source: R/rank_signature_genes.R
Description
Function to choose training IN and OUT populations using precision-recall
Usage
1
choose_training_set(gem, positive_markers, negative_markers)
Arguments
gem
Data frame of gene expression of genes (rows) in cells (columns)
positive_markers
List of gene names expected to be upregulated in IN population
negative_markers
List of gene names expected to be downregulated in IN population
Value
Lists of training IN and OUT cells
BatadaLab/scID documentation built on Oct. 21, 2021, 3:06 p.m.
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Description Usage Arguments Value
View source: R/rank_signature_genes.R
Description
Function to choose training IN and OUT populations using precision-recall
Usage
1 | choose_training_set(gem, positive_markers, negative_markers)
|
Arguments
gem |
Data frame of gene expression of genes (rows) in cells (columns) |
positive_markers |
List of gene names expected to be upregulated in IN population |
negative_markers |
List of gene names expected to be downregulated in IN population |
Value
Lists of training IN and OUT cells
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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