Files in BatadaLab/scID

geneset-guided identification of cell types using single cell RNA-seq data

DESCRIPTION

ExampleData/figures/2D_score_plot.png

ExampleData/figures/Reference_heatmap.png

ExampleData/figures/Reference_tSNE.png

ExampleData/figures/Target_heatmap.png

ExampleData/markers.rds

ExampleData/reference_clusters.rds

ExampleData/reference_gem.rds

ExampleData/target_gem.rds

LICENSE.txt

NAMESPACE

R/find_markers.R R/fit_GMM.R R/normalization_functions.R R/plots_functions.R R/rank_signature_genes.R R/read_data.R R/scID.R README.md

_config.yml

assets/images/scID_pipeline.png

man/choose_training_set.Rd man/counts_to_cpm.Rd man/final_populations.Rd man/find_markers.Rd man/gmt_to_markers.Rd man/loadfast.Rd man/make_heatmap.Rd man/normalize_gene.Rd man/plot_score_2D.Rd man/scID_weight.Rd man/scid_multiclass.Rd vignettes/Mapping_example.md vignettes/introduction.Rmd

BatadaLab/scID documentation built on Oct. 21, 2021, 3:06 p.m.