make_heatmap: Function to plot heatmap of average cluster-specific geneset...
In BatadaLab/scID: geneset-guided identification of cell types using single cell RNA-seq data
View source: R/plots_functions.R
Description
Function to plot heatmap of average cluster-specific geneset
expression in clusters of cells
Usage
1
make_heatmap(gem, labels, markers)
Arguments
gem
Data frame of gene expression (rows) per cell (columns) in target data
labels
List of cluster IDs for cells of gem
markers
Data frame of cluster specific genes with at least a "gene" and a "cluster" column
BatadaLab/scID documentation built on Oct. 21, 2021, 3:06 p.m.
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View source: R/plots_functions.R
Description
Function to plot heatmap of average cluster-specific geneset expression in clusters of cells
Usage
1 | make_heatmap(gem, labels, markers)
|
Arguments
gem |
Data frame of gene expression (rows) per cell (columns) in target data |
labels |
List of cluster IDs for cells of gem |
markers |
Data frame of cluster specific genes with at least a "gene" and a "cluster" column |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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