Man pages for Beirnaert/MetaboMeeseeks
Helper functions for metabolomics analysis
| batchPeakFilling | Function to do peak filling (xcms) with restored RT values |
| BatchResultsMerger | Restructure BatchProcessing and calculate combined results |
| BatchSplitR | Function to split up xcms object by batch to perform a within... |
| BlankCheckR | Blanco filter |
| EICsBatchPlotter | Get EIC's and plot in ggplot |
| FeatureQualityScore | Feature Quality score |
| geom_cobweb | Cobweb plot |
| geom_cobweb_bg_proto | Helper function for geom_cobweb |
| geom_cobweb_proto | Helper function for geom_cobweb |
| getBatchStructure | Get the Batch processing Structure. Necessary for merging... |
| getFoldChanges | calculate fold changes |
| GroupFillCheck | Filling and grouping checker |
| GroupFiltR | Group Filtering |
| Meeseeks.NB | Easy Cross-Validated Naive Bayes Binary Classification |
| Meeseeks.RF | Easy Cross-Validated Random Forest Binary Classification |
| Meeseeks.SVM | Easy Cross-Validated SVM Binary Classification |
| MissingValuesCheckR | Missing value proportion checker |
| mRSD_check | mRSD checker |
| PeakFiltR | Peak Filtering |
| PLSDAwrapper | Function to split up xcms object by catch to perform a within... |
| QC_plots_features | QC plots for feature data |
| QC_plots_peaks | QC plots for peak data |
| rad2polar2xy | Helper function for polar plotting |
| relevant.features.p.extended | identify features (columns in the datamatrix) which are... |
| RTcorrChecker | NOT FINISHED!!!!!! Function to compare different RT... |
| shrink_matrix | Shrink matrix from multiple samples per class to 1 value per... |
| StdMatchR | Standards Locater |
| theme_cobweb | Theme for cobweb visualization |
| unStructureBatches | obtain all datasets in a single list for easy processing with... |
