QC_plots_features: QC plots for feature data

Description Usage Arguments Value Author(s)

Description

RSD's for each class are plotted.

Usage

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QC_plots_features(FeatureMatrix, classVector, COI = NULL,
  NA_numeric_limit = NULL, plottitle = NULL, BOI_vector = NULL,
  BOI = NULL, RDSplot_text_adjustheigt = 0)

Arguments

FeatureMatrix

the matrix of Features (obtained by using the xcms::groupval function). Matrix has to have columns for features and rows for samples.

classVector

The vector of sample classes.

COI

(optional) In case only a specific class is of interest.

NA_numeric_limit

If missing values are not indicated as NA but with a numeric value like 0, supply the numerical value under which values are considered missing.

plottitle

(optional) Plot title

BOI_vector

(optional) In case the RSD's need only be calculated for a specific subset of batches, provide the character/factor vector witch batches here (same length as the number of rows in FeatureMatrix).

BOI

(optional) The name of the batch of interest. BOI_vector has to be supplied as well

RDSplot_text_adjustheigt

Height adjustment for the count number in the RSD boxplot visuzlization.

Value

several QC plots

Author(s)

Charlie Beirnaert, charlie.beirnaert@uantwerpen.be


Beirnaert/MetaboMeeseeks documentation built on May 20, 2019, 11:09 a.m.