EICsBatchPlotter: Get EIC's and plot in ggplot

In Beirnaert/MetaboMeeseeks: Helper functions for metabolomics analysis

Description

Get EIC's and plot in ggplot

Usage

EICsBatchPlotter(XCMSobject, groups = NULL, sample_names = NULL,
  sample_indices = NULL, phenotype_classname = NULL,
  plot_samples = FALSE, ...)

Arguments

XCMSobject	A single XCMS object
groups	(optional) The group indices for which to obtain an EIC. Default is all groups.
sample_names	(optional) The names of samples (from XCMSobject@phenoData) to include in the EIC plots.
sample_indices	(optional) The indices of samples (from XCMSobject@phenoData) to include in the EIC plots.
phenotype_classname	Variable name (from XCMSobject@phenoData) containing class information for the plot colours.
plot_samples	Whether to plot individual samples (default = FALSE: sample groups plotted in distinct colours)
...	Other variables to be passed along to getEIC

Value

EICresults A list with the data for plotting, and the ggplot objects.

Author(s)

Matthias Cuyckx, [e-mail]

Charlie Beirnaert, [e-mail]

Beirnaert/MetaboMeeseeks documentation built on May 20, 2019, 11:09 a.m.