API for Benjamin-Vincent-Lab/binfotron
Binfotron Bioinformatics Analysis Tools Suite
| Global functions | |
|---|---|
| %ni% | Man page |
| add_comments | Man page Source code |
| add_filler | Man page Source code |
| announce_end_of_stack | Man page Source code |
| announce_start_of_stack | Man page Source code |
| announce_total_time | Man page Source code |
| as.bullet | Man page Source code |
| as.footer | Man page Source code |
| as.header1 | Man page Source code |
| as.header2 | Man page Source code |
| balanced_folds | Man page |
| bgv_lab_prep_count_data_for_deseq2 | Man page |
| bgv_lab_prep_count_data_for_gene_signature | Man page Source code |
| binfotron | Man page |
| binfotron-package | Man page |
| break_sentence | Man page Source code |
| calc_expression_metrics | Man page Source code |
| calc_fdr | Man page Source code |
| calc_impres | Man page Source code |
| calculate_gene_signatures | Man page Source code |
| chao1 | Man page Source code |
| cjust | Man page Source code |
| cluster_group_plot | Man page |
| cluster_list_to_df | Man page |
| collapse_identical_clusters | Man page |
| compare_via_mhorn | Source code |
| convert_gmt_file | Man page Source code |
| convert_na_to_zeroes | Man page Source code |
| convert_piped_col_names_to_single_names | Man page Source code |
| correlation_central_element | Man page |
| create_gene_lookup | Man page Source code |
| dXX_index | Man page Source code |
| decode_clms | Man page Source code |
| decode_special_char | Man page Source code |
| default_ckpt_pairs | Man page Source code |
| differential_expression | Man page Source code |
| drop_low_columns | Man page Source code |
| encode_special_char | Man page Source code |
| evenness | Man page Source code |
| extract_mixcr_analyze_shotgun_reports | Man page Source code |
| find_central_elements_by_cluster | Man page Source code |
| find_low_variance_clms | Man page Source code |
| find_similar_clms | Man page Source code |
| format_gene_set_name | Man page Source code |
| format_imported_annotation | Man page Source code |
| generate_kmeans_cluster_list | Man page Source code |
| get_annotation_indention | Man page Source code |
| get_annotation_path | Man page Source code |
| get_annotation_width | Man page Source code |
| get_biomart_hsa_ucsc_path | Man page Source code |
| get_corrected_entropy_rdata_2_4096_path | Man page Source code |
| get_corrected_entropy_rdata_4097_65536_path | Man page Source code |
| get_corrected_entropy_rdata_ab1025_65K_ent1_8_path | Man page Source code |
| get_corrected_entropy_rdata_ab8_1024_ent1_8_path | Man page Source code |
| get_default_sample_key | Man page Source code |
| get_features_from_gmt_file | Man page Source code |
| get_features_from_ranks | Man page Source code |
| get_gene_set_entrez_human_bgvlab_path | Man page Source code |
| get_gene_set_entrez_human_c2_path | Man page Source code |
| get_gene_set_entrez_human_cta_path | Man page Source code |
| get_gene_set_entrez_human_kegg_path | Man page Source code |
| get_gene_set_hgnc_human_bgvlab_path | Man page Source code |
| get_gene_set_hgnc_human_c2cp_path | Man page Source code |
| get_gene_set_hgnc_human_cta_path | Man page Source code |
| get_gene_set_hgnc_human_kegg_path | Man page Source code |
| get_gene_sigs_clustered_by_category | Man page Source code |
| get_ipres_gene_sigs | Man page Source code |
| get_note_extension | Man page Source code |
| get_ranks_from_df | Man page Source code |
| get_rho | Man page |
| gg_color_hue | Man page Source code |
| group_clusters_by_size | Man page |
| has_sufficient_abundance_for_entropy | Man page Source code |
| immune_gene_set_groupings | Man page Source code |
| import_annotation | Man page Source code |
| import_gmt_as_list | Man page Source code |
| import_model_data | Man page Source code |
| inv_simpson | Man page Source code |
| is_not_null | Man page Source code |
| isolate_central_cluster_elements | Man page Source code |
| ljust | Man page Source code |
| log_transform_plus | Man page Source code |
| make_intro_text | Man page Source code |
| minimal_decimal_places_ordered | Man page Source code |
| normalize_rows_by_quartile | Man page Source code |
| operatable_columns | Man page Source code |
| pc1_vs_pc2_plot | Man page |
| pca_central_element | Man page |
| pca_variance_plot | Man page |
| plot_cumulative_features | Man page Source code |
| plot_error_volcano | Man page Source code |
| plot_waterfall | Man page Source code |
| predict_true_entropy_from_counts | Man page Source code |
| predict_true_entropy_from_diversity | Man page Source code |
| print_cluster_counts | Man page |
| pvalue_nums | Man page Source code |
| pvalue_stars | Man page Source code |
| regression | Man page Source code |
| require_data_in_samples | Man page Source code |
| rjust | Man page Source code |
| round_data | Man page Source code |
| scale_columns | Man page Source code |
| screen_counts | Man page Source code |
| serial_import | Man page Source code |
| shannon_entropy | Man page Source code |
| soft_scale | Man page Source code |
| specify_decimal | Man page Source code |
| t_test_ci | Man page |
| view_boxplot | Man page Source code |
| view_clustered_myHeatmap | Man page Source code |
| view_volcano_plot | Man page Source code |
| wrap_sentence | Man page Source code |
| write_central_elements_table | Man page |
| write_list_as_gmt | Man page |
| write_metadata | Man page Source code |
| write_ranked_central_elements_table | Man page |
| z_test_ci | Man page |
