API for Berghopper/GAPGOM
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)
| Global functions | |
|---|---|
| .all_go_similarities | Man page Source code |
| .ambiguous_enrichment | Man page Source code |
| .ambiguous_method_origin | Man page Source code |
| .ambiguous_score_rev_sort | Man page Source code |
| .ambiguous_score_sort | Man page Source code |
| .ambiguous_scorecalc | Man page Source code |
| .check_custom_gene | Man page Source code |
| .check_gos | Man page Source code |
| .check_idtype | Man page Source code |
| .check_ifclass | Man page Source code |
| .check_method | Man page Source code |
| .check_ontology | Man page Source code |
| .check_organism | Man page Source code |
| .common_ancestors | Man page Source code |
| .enrichment_analysis | Man page Source code |
| .entrezraw_to_entrez | Man page Source code |
| .ext_id_to_term_id | Man page Source code |
| .fantom_filter_entrez | Man page Source code |
| .find_disjunctive_lcas | Man page Source code |
| .generate_translation_df | Man page Source code |
| .get_last_common_ancestors | Man page Source code |
| .get_package_version | Man page Source code |
| .get_short_path_info | Man page Source code |
| .go_ids_lookup | Man page Source code |
| .longest_path | Man page Source code |
| .onAttach | Source code |
| .organism_to_species_lib | Man page Source code |
| .predict_combined | Man page Source code |
| .predict_fisher | Man page Source code |
| .predict_kendall | Man page Source code |
| .predict_pearson | Man page Source code |
| .predict_sobolev | Man page Source code |
| .predict_spearman | Man page Source code |
| .prepare_score_df | Man page |
| .prepare_score_matrix_topoicsim | Man page Source code |
| .prepare_variables_topoicsim | Man page Source code |
| .resolve_genes_unique_gos | Man page Source code |
| .resolve_keys_col | Man page Source code |
| .score_combined | Man page Source code |
| .score_fisher | Man page Source code |
| .score_kendall | Man page Source code |
| .score_pearson | Man page Source code |
| .score_sobolev | Man page Source code |
| .score_spearman | Man page Source code |
| .set_edge_weight | Man page Source code |
| .set_identical_items | Man page Source code |
| .set_values | Man page Source code |
| .term_id_to_ext_id | Man page Source code |
| .topo_ic_sim_g1g2 | Man page Source code |
| .topo_ic_sim_geneset | Man page Source code |
| .topo_ic_sim_titj | Man page Source code |
| .unique_combos | Man page Source code |
| ambiguous_functions | Man page |
| dag_funcs | Man page |
| expression_prediction | Man page Source code |
| expression_semantic_scoring | Man page Source code |
| expset | Man page |
| fantom_download | Man page |
| fantom_load_raw | Man page Source code |
| fantom_to_expset | Man page Source code |
| fisher_metric | Man page Source code |
| geometrical_measures | Man page |
| glb_checks | Man page |
| id_translation_df | Man page |
| misc_fisher | Man page Source code |
| misc_functions | Man page |
| misc_kendall | Man page Source code |
| misc_pearson | Man page Source code |
| misc_sobolev | Man page Source code |
| misc_spearman | Man page Source code |
| set_go_data | Man page Source code |
| sobolev_metric | Man page Source code |
| topo_ic_sim_genes | Man page Source code |
| topo_ic_sim_term | Man page Source code |
