Files in BinDuan/MASCOT
Model-based Analysis of Single cell CRISPR knockOuT screening
.gitattributes
DESCRIPTION
LICENSE
NAMESPACE
R/MASCOT.R
README.md
data_format_example/crop_unstimulated.RData
data_format_example/crop_unstimulated_sgrna.fa
data_format_example/perturb_GSM2396857.fa
data_format_example/perturb_GSM2396857/barcodes.tsv
data_format_example/perturb_GSM2396857/cbc_gbc_dict.tsv
data_format_example/perturb_GSM2396857/cbc_gbc_dict_grna.tsv
data_format_example/perturb_GSM2396857/genes.tsv
data_format_example/perturb_GSM2396857/matrix.mtx
figure/KO_efficiency.png
figure/distribution_of_cells_for_each_topic.png
figure/get_high_var_genes.png
figure/nonzero_ratio.png
figure/overview_of_cell_filterings.png
figure/phenotype_capture.png
figure/quality_control.png
figure/select_topic_number.png
figure/sgRNA_efficiency.png
figure/topic_annotation.png
man/Batch_adjust.Rd
man/Cell_filtering.Rd
man/Cell_qc.Rd
man/Get_distribution_diff.Rd
man/Get_high_var_genes.Rd
man/Get_offtarget.Rd
man/Get_topics.Rd
man/Input_preprocess.Rd
man/Input_preprocess_10X.Rd
man/Plot_cell_topic.Rd
man/Plot_filtering_overview.Rd
man/Rank_diff.Rd
man/Rank_overall.Rd
man/Rank_topic_specific.Rd
man/Topic_func_anno.Rd
