Input_preprocess_10X: Checking the input data if the data was generated with 10X.

In BinDuan/MASCOT: Model-based Analysis of Single cell CRISPR knockOuT screening

Description

For convenience, if the data is generated by 10X genomics, user can use this function to input them. Of course, you can still handle the data to the standard type, then use "Input_preprocess()" function as well.

Usage

Input_preprocess_10X(directory, sample_info_batch = NULL)

Arguments

directory	This is a directory, including "genes.tsv", "barcodes.tsv", "matrix.mtx", "cbc_gbc_dict.tsv", "cbc_gbc_dict_grna.tsv".
sample_info_batch	NULL by default. A character vector showing the batch of each sample.

Value

A list containing "expression profile", "sample_info_gene", "sample_info_sgRNA" and "sample_info_batch" if it is not NULL.

Author(s)

Bin Duan

References

http://satijalab.org/seurat/

BinDuan/MASCOT documentation built on May 23, 2019, 2:42 p.m.