Input_preprocess: Checking the input data.

Description Usage Arguments Value Author(s)

View source: R/MASCOT.R

Description

Integrating the expression profile and corresponding sample information, including each sample's knockout gene, detected sgRNA and batch information.

Usage

1
Input_preprocess(expression_profile, sample_info_gene, sample_info_sgRNA, sample_info_batch = NULL)

Arguments

expression_profile

A dataframe showing the original expression profile with sample names and gene names.

sample_info_gene

A character vector showing the knockout gene of each sample. The vector's column name is the sample name.

sample_info_sgRNA

A character vector showing the sgRNA detected in each sample. The vector's column name is the sample name.

sample_info_batch

NULL by default. A character vector showing the batch of each sample. The vector's column name is the sample name.

Value

A list containing "expression profile", "sample_info_gene", "sample_info_sgRNA" and "sample_info_batch" if it is not NULL.

Author(s)

Bin Duan


BinDuan/MASCOT documentation built on May 23, 2019, 2:42 p.m.