Man pages for BinDuan/MASCOT
Model-based Analysis of Single cell CRISPR knockOuT screening

Batch_adjustAdjusting batch effect.
Cell_filteringFiltering cells and calculating the overall knockout...
Cell_qcQuality control for single-cell CRISPR screening data.
Get_distribution_diffCalcualting topic distribution difference between case and...
Get_high_var_genesIdentify highly dispersion differentially expressed genes.
Get_offtargetEvaluating the offtarget effect of sgRNAs.
Get_topicsObtaining the result by performing topic model.
Input_preprocessChecking the input data.
Input_preprocess_10XChecking the input data if the data was generated with 10X.
Plot_cell_topicPlotting a heatmap showing the distribution of cells in each...
Plot_filtering_overviewplot cells filtered by each filtering steps.
Rank_diffObtaining important knockouts between two different...
Rank_overallObtaining the overall perturbation effect ranking list.
Rank_topic_specificObtaining the topic-specific ranking list.
Topic_func_annoAnnotating each topic's function.
BinDuan/MASCOT documentation built on April 25, 2018, 3:24 p.m.