Man pages for Bioconductor/Category
Category Analysis
| applyByCategory | Apply a function to a vector of statistics, by category |
| Category-defunct | Defunct Functions in Package 'Category' |
| cateGOryMatrix | Construct a category membership matrix from a list of gene... |
| categoryToEntrezBuilder | Return a list mapping category ids to Entrez Gene ids |
| cb_contingency | Create and Test Contingency Tables of Chromosome Band... |
| cb_parse_band_Hs | Parse Homo Sapiens Chromosome Band Annotations |
| cb_parse_band_Mm | Parse Mus Musculus Chromosome Band Annotations |
| cb_test | Chromosome Band Tree-Based Hypothesis Testing |
| ChrBandTree-class | Class "ChrBandTree" |
| ChrMapHyperGParams-class | Class "ChrMapHyperGParams" |
| ChrMapHyperGResult-class | Class "ChrMapHyperGResult" |
| ChrMapLinearMParams-class | Class "ChrMapLinearMParams" |
| ChrMapLinearMResult-class | Class "ChrMapLinearMResult" |
| DatPkg-class | Class "DatPkg" |
| effectSize | Extract estimated effect sizes |
| exampleLevels | Display a sample node from each level of a ChrBandTree object |
| findAMstats | Compute per category summary statistics |
| getPathNames | A function to print pathway names given their numeric ID. |
| GOHyperGParams-class | Class "GOHyperGParams" |
| GSEAGOHyperGParams | Helper function for constructing a GOHyperGParams objects or... |
| gseattperm | Permutation p-values for GSEA |
| hyperg | Hypergeometric (gene set enrichment) tests on character... |
| HyperGParams-class | Class "HyperGParams" |
| HyperGResult-accessors | Accessors for HyperGResult Objects |
| HyperGResultBase-class | Class "HyperGResultBase" |
| HyperGResult-class | Class "HyperGResult" |
| hyperGTest | Hypergeometric Test for association of categories and genes |
| KEGGHyperGParams-class | Class "KEGGHyperGParams" and "PFAMHyperGParams" |
| LinearMParams-class | Class "LinearMParams" |
| LinearMResultBase-class | Class "LinearMResultBase" |
| LinearMResult-class | Class "LinearMResult" |
| linearMTest | A linear model-based test to detect enrichment of unusual... |
| local_test_factory | Local and Global Test Function Factories |
| makeChrBandGraph | Create a graph representing chromosome band annotation data |
| makeEBcontr | A function to make the contrast vectors needed for EBarrays |
| makeValidParams | Non-standard Generic for Checking Validity of Parameter... |
| MAPAmat | Mapping chromosome bands to genes |
| NewChrBandTree | Create a new ChrBandTree object |
| OBOHyperGParams-class | Class "OBOHyperGParams" |
| probes2MAP | Map probe IDs to MAP regions. |
| probes2Path | A function to map probe identifiers to pathways. |
| tree_visitor | Tree Visitor Function |
| ttperm | A simple function to compute a permutation t-test. |
| universeBuilder | Return a vector of gene identifiers with category annotations |
