LinearMResultBase-class: Class "LinearMResultBase"

In Bioconductor/Category: Category Analysis

Class "LinearMResultBase"

Description

This VIRTUAL class represents common elements of the return values of generic functions like linearMTest. These elements are essentially those that are passed through from the input parameters. See LinearMResult for a concrete result class with the basic outputs.

Objects from the Class

A virtual Class: No objects may be created from it.

Slots

All of these slots correspond to slots in the LinearMParams class.

annotation:

Object of class "character" ~~

geneIds:

Object of class "ANY" ~~

testName:

Object of class "character" ~~

pvalueCutoff:

Object of class "numeric" ~~

minSize:

Object of class "integer" ~~

testDirection:

Object of class "character" ~~

conditional:

Object of class "logical" ~~

graph:

Object of class "graph" ~~

gsc:

Object of class "GeneSetCollection" ~~

Methods

annotation

signature(object = "LinearMResultBase"): ...

conditional

signature(r = "LinearMResultBase"): ...

description

signature(object = "LinearMResultBase"): ...

geneIdsByCategory

signature(object = "LinearMResultBase"): ...

geneIds

signature(object = "LinearMResultBase"): ...

geneIdUniverse

signature(r = "LinearMResultBase"): ...

geneMappedCount

signature(r = "LinearMResultBase"): ...

pvalueCutoff

signature(r = "LinearMResultBase"): ...

show

signature(object = "LinearMResultBase"): ...

sigCategories

signature(r = "LinearMResultBase"): ...

summary

signature(object = "LinearMResultBase"): ...

testDirection

signature(r = "LinearMResultBase"): ...

conditional

signature(object = "LinearMResultBase"): ...

testName

signature(r = "LinearMResultBase"): ...

universeCounts

signature(r = "LinearMResultBase"): ...

universeMappedCount

signature(r = "LinearMResultBase"): ...

Author(s)

Deepayan Sarkar, Michael Lawrence

See Also

LinearMResult, LinearMParams, linearMTest

Bioconductor/Category documentation built on Nov. 2, 2024, 6:33 a.m.