HyperGResultBase-class: Class "HyperGResultBase"

In Bioconductor/Category: Category Analysis

Class "HyperGResultBase"

Description

This VIRTUAL class represents common elements of the return values of generic functions like hyperGTest. All subclasses are intended to implement the accessor functions documented at HyperGResult-accessors.

Objects from the Class

A virtual Class: No objects may be created from it.

Slots

annotation:

Object of class "character" giving the name of the annotation data package used.

geneIds:

Object of class "ANY" (usually a character vector, but sometimes an integer vector). The input vector of gene identifiers intersected with the universe of gene identifiers used in the computation.

testName:

Object of class "character" identifying the testing method used.

pvalueCutoff:

Numeric value used by the testing method as a p-value cutoff. Not all testing methods use this. Also used by the show method to count number of significant terms.

testDirection:

A string indicating whether the test performed was for overrepresentation ("over") or underrepresentation("under").

Methods

See HyperGResult-accessors.

Author(s)

Seth Falcon

See Also

HyperGResult-class GOHyperGResult-class HyperGResult-accessors

Bioconductor/Category documentation built on Oct. 29, 2023, 4:15 p.m.