ChrMapLinearMResult-class: Class "ChrMapLinearMResult"

In Bioconductor/Category: Category Analysis

Class "ChrMapLinearMResult"

Description

This class represents the results of a linear model-based test for systematic changes in a per-gene statistic by chromosome band annotation. The linearMTest function returns an instance of ChrMapLinearMResult when given a parameter object of class ChrMapLinearMParams. Most slots can be queried using accessors.

Objects from the Class

Objects can be created by calls of the form new("ChrMapLinearMResult", ...), but is more commonly created by callinf linearMTest

Slots

pvalues:

Object of class "numeric", with the p-values for each term.

pvalue.order:

Object of class "integer", the order vector (increasing) for the p-values.

effectSize:

Object of class "numeric", with the effect size for each term.

annotation:

Object of class "character" ~~

geneIds:

Object of class "ANY" ~~

testName:

Object of class "character" ~~

pvalueCutoff:

Object of class "numeric" ~~

minSize:

Object of class "integer" ~~

testDirection:

Object of class "character" ~~

conditional:

Object of class "logical" ~~

graph:

Object of class "graph" ~~

gsc:

Object of class "GeneSetCollection" ~~

Extends

Class "LinearMResult", directly.

Class "LinearMResultBase", by class "LinearMResult", distance 2.

Methods

None

Author(s)

Deepayan Sarkar, Michael Lawrence

See Also

linearMTest, ChrMapLinearMParams, LinearMResult, LinearMResultBase,

Examples

showClass("ChrMapLinearMResult")

Bioconductor/Category documentation built on Oct. 29, 2023, 4:15 p.m.