BiostatQian/ASAFE: Ancestry Specific Allele Frequency Estimation
Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Qian Zhang <qszhang@uw.edu> |
| Bioconductor views | BiomedicalInformatics ExperimentalDesign Genetics GenomeWideAssociation LinkageDisequilibrium SNP |
| Maintainer | Qian Zhang <qszhang@uw.edu> |
| License | Artistic-2.0 |
| Version | 0.99.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
