Man pages for Bishop-Laboratory/RLSeq
RLSeq: An analysis package for R-loop mapping data
| analyzeRLFS | Analyze RLFS |
| auxdata | Auxiliary Data |
| available_genomes | Available Genomes |
| checkRLFSAnno | Check RLFS |
| corrAnalyze | Analyze Correlations |
| corrHeatmap | Plot Correlation Results |
| featureEnrich | Test Genomic Feature Enrichment |
| feature_ggplot | Feature ggplot |
| geneAnnotation | Annotate R-Loops with Genes |
| genomeMasks | Genome Masks |
| getChromSizes | Get Chrom Sizes |
| getGSSignal | Get GS Signal |
| getRLFSAnno | Get RLFS |
| noiseAnalyze | Analyze sample noise |
| noiseComparisonPlot | Creates a metaplot for comparing noise analysis results with... |
| peak_stats | Build peak statistics tibble |
| pipe | Pipe operator |
| plotEnrichment | Plot Enrichment Test Results |
| plotFingerprint | Plot noise analysis results as a fingerprint plot |
| plotRLFSRes | Plot RLFS analysis results |
| plotRLRegionOverlap | Plot RL-Region overlap with RLRanges |
| plotTxFeatureOverlap | Plot Transcript Feature Overlap |
| predictCondition | Predict Condition |
| randomWindows | Random Genomic Windows |
| report | RLSeq Report |
| rlbaseNoiseAnalyze | RLBase Sample Noise Analysis Results |
| RLRanges | Construct RLRanges Dataset |
| RLRangesFromRLBase | Access RLBase samples as RLRanges |
| rlRegionTest | R-Loop region test |
| RLResults | RLSeq Results |
| rlsampleTxOl | RLBase Sample Transcript Feature Overlaps |
| RLSeq | RLSeq |
| tableToRegions | Table to Regions |
| txFeatureOverlap | Calculate overlap with transcript features |
| urlExists | Check if URL exists |
