auxdata: Auxiliary Data

In Bishop-Laboratory/RLSeq: RLSeq: An analysis package for R-loop mapping data

Auxiliary Data

Description

A list containing data used by RLSeq functions. It can also be useful for checking the available modes and genomes in RLSeq. See also the data-raw/auxdata.R script that was used to create it.

Usage

auxdata

Format

An object of class list of length 12.

Details

Structure

A named list containing the following entries:

• db_cols

  • A tbl with colors associated with each database in RLHub useful for plotting. See also RLHub::annotations.

• annotypes

  • A tbl containing the annotation databases and annotation types available from RLBase. See also RLHub::annotations.

• ip_cols

  • A tbl containing the colors associated with each "Immunoprecipitation type" (ip_type) in RLBase. See also RLHub::rlbase_samples.

• mode_cols

  • A tbl containing the colors associated with each R-loop mapping mode in RLHub::rlbase_samples.

• heat_cols

  • A tbl containing the colors associated with user-supplied data and RLBase data when running corrHeatmap.

• label_cols

  • A tbl containing the colors associated with the labels in RLBase. See also RLHub::rlbase_samples.

• prediction_cols

  • A tbl containing the colors associated with the predictions in RLBase. See also RLHub::rlbase_samples.

• prediction_label_cols

  • A tbl containing the colors associated with the prediction-label combinations in RLBase. See also RLHub::rlbase_samples.

• available_modes

  • A tbl containing the modes available in RLBase and associated metadata. See also RLHub::rlbase_samples.

• available_genomes

  • A character showing all the official UCSC genomes available for use with RLSeq. See also available_genomes.

• misc_modes

  • A character showing the R-loop mapping modes that are lumped into the 'misc' category for simplification of plotting.

Examples

auxdata

Bishop-Laboratory/RLSeq documentation built on Jan. 28, 2023, 11:38 p.m.