plotFingerprint: Plot noise analysis results as a fingerprint plot
In Bishop-Laboratory/RLSeq: RLSeq: An analysis package for R-loop mapping data

plotFingerprint

R Documentation

Plot noise analysis results as a fingerprint plot

Description

Plots the results of the noise analysis in noiseAnalyze. Creates a fingerprint plot like those developed by Diaz et al, 2012 and those provided by deepTools.

Usage

plotFingerprint(object)

Arguments

object

An RLRanges object with noiseAnalyze already run.

Details

The term "Fingerprint plot" comes from deepTools.

Value

A ggplot object. See also ggplot2::ggplot.

noiseComparisonPlot

A plot showing the noise analysis results from the user-supplied sample compared to similar samples from RLBase.

Examples


# Example RLRanges dataset with analyzeRLFS() already run.
rlr <- readRDS(system.file("extdata", "rlrsmall.rds", package = "RLSeq"))

# Plot RLFS res
plotFingerprint(rlr)

Bishop-Laboratory/RLSeq documentation built on Jan. 28, 2023, 11:38 p.m.