RLResults: RLSeq Results

In Bishop-Laboratory/RLSeq: RLSeq: An analysis package for R-loop mapping data

RLSeq Results

Description

Functions for creating and accessing the R-loop results (RL Results). These are a type of object used for holding the results of the tests implemented in RLSeq. They can be accessed using the rlresult function.

Usage

rlresult(object, resultName)

Arguments

object	RLRanges object.
resultName	Name of the result slot to access. See details.

Details

Slot descriptions

• featureEnrichment

  • The tbl generated from running featureEnrich.

  • The structure and column descriptions are provided in detail within RLHub::feat_enrich_samples.

• correlationMat

  • The matrix generated from running corrAnalyze.

  • Contains pairwise pearson correlations between all samples in RLBase and the supplied RLRanges object.

• rlfsRes

  • The list generated from running analyzeRLFS.

  • See analyzeRLFS for description of structure.

• noiseAnalysis

  • The tbl generated from running noiseAnalyze.

• txFeatureOverlap

  • The tbl generated from running txFeatureOverlap.

• geneAnnoRes

  • The tbl generated from running geneAnnotation.

• predictRes

  • The list generated from running predictCondition.

• rlRegionRes

  • The list generated from running rlRegionTest.

Value

The contents of the requested slot.

Examples

rlr <- readRDS(system.file("extdata", "rlrsmall.rds", package = "RLSeq"))

rlresult(rlr, "predictRes")

Bishop-Laboratory/RLSeq documentation built on Jan. 28, 2023, 11:38 p.m.