API for C3c6e6/SetRank
Advanced Gene Set Enrichment Analysis
| Global functions | |
|---|---|
| as.RankedTestSet | Source code |
| as.UnrankedTestSet | Source code |
| boolJaccard | Source code |
| buildEdgeTable | Source code |
| buildSetCollection | Man page Source code |
| buildSetNet | Source code |
| calculateSetRank | Source code |
| createCytoscapeVizMap | Man page Source code |
| createGeneNetVizFile | Source code |
| createIDConverter | Man page Source code |
| createPathwayTable | Man page Source code |
| createSet | Source code |
| cytoscapeExport | Man page Source code |
| expandWithTermOffspring | Source code |
| exportGeneNets | Man page Source code |
| exportMultipleResults | Man page Source code |
| exportSingleResult | Man page Source code |
| fisherCriticalValues | Source code |
| fisherPValue | Source code |
| fixGraphML | Man page Source code |
| generateContinuousMapping | Man page Source code |
| generatePMapping | Man page Source code |
| getAdjustedPValues | Source code |
| getConditionOrder | Source code |
| getCorrectedPValues | Source code |
| getIntersectionPValue | Source code |
| getLogFCTable | Source code |
| getMaxP | Source code |
| getMissingNodes | Source code |
| getNodeTable | Source code |
| getNodesToDelete | Source code |
| getPValueTable | Source code |
| getPrimarySetPValues | Source code |
| getSetPValue | Source code |
| getSetPValue.RankedTestSet | Source code |
| getSetPValue.UnrankedTestSet | Source code |
| getSetPairStatistics | Source code |
| getSetPairStatistics.RankedTestSet | Source code |
| getSetPairStatistics.UnrankedTestSet | Source code |
| getSetPairStatistics_base | Source code |
| getSignificantIntersections | Source code |
| handleProperty | Source code |
| intersectionTest | Source code |
| jaccardDistanceMatrix | Source code |
| membershipTable | Man page Source code |
| minimalI | Source code |
| orderTable | Source code |
| pAdjustAndCorrect | Source code |
| pack | Source code |
| propertyFunctions | Man page |
| setGlobalAttributes | Source code |
| setRankAnalysis | Man page Source code |
| setRankPValue | Source code |
| sinkDelete | Source code |
| sinkDeletePValue | Source code |
| styleXML | Man page |
| uniqueCount | Source code |
| unpack | Source code |
| writeGeneSetNetwork | Source code |
| writeMembership | Source code |
