cytoscapeExport: Prepare networks for visualization in Cytoscape
In C3c6e6/SetRank: Advanced Gene Set Enrichment Analysis

Description Usage Arguments Details Value Author(s)

Exports a list of networks in GraphML format and creates a Cytoscape a VizMap XML file with a visualisation style applicable to all networks.

1	cytoscapeExport(networkList, outputDir)

`networkList`	A named list of networks generated by the `setRankAnalysis` function.
`outputDir`	The path where the files should be written to. The last element in the path will be created when it doesn't exist.

Each network will be written to a separate file in the specified output directory. The names of the supplied list of networks will be used as filenames with the .net.xml extension added. The VizMap file will be called setrank.xml and will also be written to the output directory.

None. The function writes out files as a side effect.

Cedric Simillion

C3c6e6/SetRank documentation built on May 6, 2019, 9:12 a.m.