createCytoscapeVizMap: Create a Cytoscape visual style for one or more SetRank...
In C3c6e6/SetRank: Advanced Gene Set Enrichment Analysis

Description Usage Arguments Details Value Author(s)

Generates a VizMap XML file that can be imported, together with the network in Cytoscape, a tool for network analysis and visualization (urlhttp://www.cytoscape.org).

1 2	createCytoscapeVizMap(network = NULL, networkList = NULL, outputFile = "setrank.xml")

`network`	A single network to generate a style for.
`networkList`	A list of networks to generate a single style for.
`outputFile`	The path for the ouputfile.

You must either pass a single network, through the network argument, or a list of networks, through the networkList argument, to the function. When using the latter option, the function will generate a single style applicable to all networks. This style allows to easily spot differences between different networks generated from the same dataset.

Specifying both arguments will results in an error. Networks should of course be generated by setRankAnalysis function.

None. The function writes out a Cytoscape VizMap XML file as a side effect.

Cedric Simillion

C3c6e6/SetRank documentation built on May 6, 2019, 9:12 a.m.