sjdWrap: SJD Wrap

In CHuanSite/SJD: Structured Joint Decomposition (SJD)

SJD Wrap

Description

wrapping up expression matrices (of different species) with only shared genes as SJD input

Usage

sjdWrap(
  data.list,
  species.vector,
  geneType.vector,
  geneType.out = "symbol",
  species.out
)

Arguments

data.list	input list of expression matrices from different species i.e human and mouse datasets
species.vector	character of species type of each matrix i.e c('human', 'mouse', 'mouse')
geneType.vector	character of gene/rowname type of each matrix i.e c("symbol","ensembl","symbol")
geneType.out	character of output gene/rowname type of each matrix i.e "symbol"
species.out	character of output species type for gene/rowname

Value

A list of expression matrices (of different species) with only shared genes

Examples

data(NeuroGenesis4)
SJDdataIN = sjdWrap(
data.list = NeuroGenesis4,
species.vector=c("human","human","human","mouse"),
geneType.vector=c("symbol","ensembl","symbol","symbol"),
geneType.out="symbol",
species.out="human")

CHuanSite/SJD documentation built on Nov. 29, 2024, 5:52 a.m.