Files in CVPIA-OSC/lateFallRunDSM
Structured Decision Fall Run Model for CVPIA
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/adults.R
R/data.R
R/fill.R
R/get_habitat.R
R/get_spawning_adults.R
R/growth.R
R/juvenile_month_dynamic.R
R/migrate.R
R/model.R
R/ocean_entry_success.R
R/pulse_movement.R
R/rear.R
R/route.R
R/spawn_success.R
R/surv_egg_to_fry.R
R/survival.R
R/territory.R
R/utils.R
README.md
_pkgdown.yaml
analysis/windows-run-scenarios.R
analysis/windows-sensitivity-analysis.R
calibration/calibration-results.rds
calibration/calibration.Rmd
calibration/calibration.nb.html
calibration/evaluate.R
calibration/fitness.R
calibration/fits/result-2021-08-23.rds
calibration/fits/result-2021-08-24.rds
calibration/run-calibration.R
calibration/update-params.R
data-raw/cache-data.R
data-raw/misc/Grouping.csv
data-raw/model-parameters.R
data/adult_harvest_rate.rda
data/adult_seeds.rda
data/cross_channel_stray_rate.rda
data/delta_survival_betas.rda
data/diversity_group.rda
data/fry_scalers.rda
data/growth_rates.rda
data/growth_rates_floodplain.rda
data/growth_rates_inchannel.rda
data/hatchery_allocation.rda
data/juv_scalers.rda
data/mass_by_size_class.rda
data/month_return_proportions.rda
data/natural_adult_removal_rate.rda
data/params.rda
data/proportion_hatchery.rda
data/size_class_labels.rda
data/spawn_scalers.rda
data/stray_rate.rda
data/watershed_attributes.rda
data/watershed_labels.rda
docs/404.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/adult_harvest_rate.html
docs/reference/adult_seeds.html
docs/reference/adult_stray.html
docs/reference/cross_channel_stray_rate.html
docs/reference/days_in_month.html
docs/reference/diversity_group.html
docs/reference/figures/dependencyChain.svg
docs/reference/fill.html
docs/reference/fill_natal.html
docs/reference/fill_regional.html
docs/reference/gamma_MOM.html
docs/reference/get_habitat.html
docs/reference/get_migratory_survival.html
docs/reference/get_rearing_survival.html
docs/reference/get_spawning_adults.html
docs/reference/growth.html
docs/reference/growth_floodplain.html
docs/reference/growth_rates.html
docs/reference/hatchery_allocation.html
docs/reference/index.html
docs/reference/late_fall_run_model.html
docs/reference/load_baseline_data.html
docs/reference/mass_by_size_class.html
docs/reference/migrate.html
docs/reference/month_return_proportions.html
docs/reference/natural_adult_removal_rate.html
docs/reference/ocean_entry_success.html
docs/reference/ocean_transition_month.html
docs/reference/params.html
docs/reference/pretty_num.html
docs/reference/proportion_hatchery.html
docs/reference/pulse_movement.html
docs/reference/rear.html
docs/reference/route.html
docs/reference/route_and_rear_deltas.html
docs/reference/route_bypass.html
docs/reference/route_regional.html
docs/reference/route_south_delta.html
docs/reference/spawn_success.html
docs/reference/stray_rate.html
docs/reference/surv_adult_enroute.html
docs/reference/surv_adult_prespawn.html
docs/reference/surv_egg_to_fry.html
docs/reference/surv_juv_bypass.html
docs/reference/surv_juv_delta.html
docs/reference/surv_juv_outmigration_delta.html
docs/reference/surv_juv_outmigration_sac.html
docs/reference/surv_juv_outmigration_sac_delta.html
docs/reference/surv_juv_outmigration_san_joaquin.html
docs/reference/surv_juv_rear.html
docs/reference/territory_by_size.html
docs/sitemap.xml
lateFallRunDSM.Rproj
man/adult_harvest_rate.Rd
man/adult_seeds.Rd
man/adult_stray.Rd
man/cross_channel_stray_rate.Rd
man/days_in_month.Rd
man/diversity_group.Rd
man/figures/dependencyChain.svg
man/fill.Rd
man/gamma_MOM.Rd
man/get_habitat.Rd
man/get_migratory_survival.Rd
man/get_rearing_survival.Rd
man/get_spawning_adults.Rd
man/growth.Rd
man/growth_floodplain.Rd
man/growth_rates.Rd
man/hatchery_allocation.Rd
man/juvenile_month_dynamic.Rd
man/late_fall_run_model.Rd
man/mass_by_size_class.Rd
man/migrate.Rd
man/month_return_proportions.Rd
man/natural_adult_removal_rate.Rd
man/ocean_entry_success.Rd
man/ocean_transition_month.Rd
man/params.Rd
man/proportion_hatchery.Rd
man/pulse_movement.Rd
man/rear.Rd
man/route.Rd
man/route_alternative.Rd
man/route_and_rear_deltas.Rd
man/route_bypass.Rd
man/route_bypass_alternative.Rd
man/route_regional.Rd
man/route_regional_alternative.Rd
man/route_to_south_delta.Rd
man/spawn_success.Rd
man/stray_rate.Rd
man/surv_adult_enroute.Rd
man/surv_adult_prespawn.Rd
man/surv_egg_to_fry.Rd
man/surv_juv_bypass.Rd
man/surv_juv_delta.Rd
man/surv_juv_outmigration_delta.Rd
man/surv_juv_outmigration_sac.Rd
man/surv_juv_outmigration_san_joaquin.Rd
man/surv_juv_rear.Rd
man/territory_by_size.Rd
