get_migratory_survival: Get Migratory Survival Rates
In CVPIA-OSC/lateFallRunDSM: Structured Decision Fall Run Model for CVPIA

get_migratory_survival

R Documentation

Get Migratory Survival Rates

Description

Calculates the juvenile out migration survival rates in all regions for a month and year of the simulation

Usage

get_migratory_survival(
  year,
  month,
  cc_gates_prop_days_closed,
  freeport_flows,
  vernalis_flows,
  stockton_flows,
  vernalis_temps,
  prisoners_point_temps,
  CVP_exports,
  SWP_exports,
  upper_sacramento_flows,
  delta_inflow,
  avg_temp_delta,
  avg_temp,
  delta_proportion_diverted,
  ..surv_juv_outmigration_sj_int,
  .surv_juv_outmigration_san_joaquin_medium,
  .surv_juv_outmigration_san_joaquin_large,
  min_survival_rate,
  stochastic
)

Arguments

`year`	The simulation year, 1-20
`month`	The simulation month, 1-8
`cc_gates_prop_days_closed`	More details at `delta_cross_channel_closed`
`freeport_flows`	More details at `freeport_flow`
`vernalis_flows`	More details at `vernalis_flow`
`stockton_flows`	More details at `stockton_flow`
`vernalis_temps`	More details at `vernalis_temperature`
`prisoners_point_temps`	More details at `prisoners_point_temperature`
`CVP_exports`	More details at `cvp_exports`
`SWP_exports`	More details at `swp_exports`
`upper_sacramento_flows`	average monthly flows on the Upper Sacramento River in cubic meters per second, more details at `upper_sacramento_flows`
`delta_inflow`	Variable describing delta inflow in cubic meters per second, more details at `delta_inflow`
`avg_temp_delta`	Variable describing monthly mean temperature in celsius, more details at `delta_temprature`
`delta_proportion_diverted`	Variable describing diversions from the delta in cubic meters per seccond, more details at `delta_proportion_diverted`
`..surv_juv_outmigration_sj_int`	Intercept for `surv_juv_outmigration_san_joaquin`
`.surv_juv_outmigration_san_joaquin_medium`	Size related intercept for `surv_juv_outmigration_san_joaquin` medium sized fish
`.surv_juv_outmigration_san_joaquin_large`	Size related intercept for `surv_juv_outmigration_san_joaquin` large sized fish
`min_survival_rate`	estimated survival rate if temperature threshold is exceeded
`stochastic`	`TRUE` `FALSE` value indicating if model is being run stochastically