surv_juv_rear: Juvenile Rearing Survival

In CVPIA-OSC/lateFallRunDSM: Structured Decision Fall Run Model for CVPIA

Juvenile Rearing Survival

Description

Calculates the juvenile rearing survival inchannel and on the floodplain

Usage

surv_juv_rear(
  max_temp_thresh,
  avg_temp_thresh,
  high_predation,
  contact_points,
  prop_diversions,
  total_diversions,
  stranded,
  weeks_flooded,
  ..surv_juv_rear_int = lateFallRunDSM::params$..surv_juv_rear_int,
  .avg_temp_thresh = lateFallRunDSM::params$.surv_juv_rear_avg_temp_thresh,
  .high_predation = lateFallRunDSM::params$.surv_juv_rear_high_predation,
  .surv_juv_rear_contact_points = lateFallRunDSM::params$.surv_juv_rear_contact_points,
 
    ..surv_juv_rear_contact_points = lateFallRunDSM::params$..surv_juv_rear_contact_points,
 
    .surv_juv_rear_prop_diversions = lateFallRunDSM::params$.surv_juv_rear_prop_diversions,
 
    ..surv_juv_rear_prop_diversions = lateFallRunDSM::params$..surv_juv_rear_prop_diversions,
 
    .surv_juv_rear_total_diversions = lateFallRunDSM::params$.surv_juv_rear_total_diversions,
 
    ..surv_juv_rear_total_diversions = lateFallRunDSM::params$..surv_juv_rear_total_diversions,
  .stranded = lateFallRunDSM::params$.surv_juv_rear_stranded,
  .medium = lateFallRunDSM::params$.surv_juv_rear_medium,
  .large = lateFallRunDSM::params$.surv_juv_rear_large,
  .floodplain = lateFallRunDSM::params$.surv_juv_rear_floodplain,
  min_survival_rate = lateFallRunDSM::params$min_survival_rate,
  stochastic
)

Arguments

max_temp_thresh	variable representing probability of exceeding the max temperature threshold
avg_temp_thresh	variable representing probability of exceeding the avg temperature threshold
high_predation	variable representing indicator of high predation for a watershed
contact_points	variable representing total number of contact points per watershed
prop_diversions	variable representing proportion of water diverted
total_diversions	variable representing total amount of water diverted
stranded	variable representing stranding rate per watershed
weeks_flooded	variable representing total weeks flooded per watershed
..surv_juv_rear_int	intercept, source: calibration (varies by tributary)
.avg_temp_thresh	coefficient for avg_temp_thresh variable
.high_predation	coefficient for high_predation variable
.surv_juv_rear_contact_points	coefficient for contact_points variable
..surv_juv_rear_contact_points	calibrated coefficient for contact_points variable
.surv_juv_rear_prop_diversions	coefficient for prop_diversions variable
..surv_juv_rear_prop_diversions	calibrated coefficient for prop_diversions variable
.surv_juv_rear_total_diversions	coefficient for total_diversions variable
..surv_juv_rear_total_diversions	calibrated coefficient for total_diversions variable
.stranded	coefficient for stranded variable
.medium	size related intercept for medium sized fish
.large	size related intercept for large sized fish
.floodplain	Additional intercept for floodplain rearing benefit
min_survival_rate	estimated survival rate if temperature threshold is exceeded
stochastic	TRUE FALSE value indicating if model is being run stochastically

Details

See params for details on parameter sources

Source

IP-117068

CVPIA-OSC/lateFallRunDSM documentation built on June 30, 2022, 10:04 p.m.