surv_juv_delta: Juvenile Delta Survival

In CVPIA-OSC/lateFallRunDSM: Structured Decision Fall Run Model for CVPIA

Juvenile Delta Survival

Description

Calculates the juvenile rearing survival in the deltas

Usage

surv_juv_delta(
  avg_temp,
  max_temp_thresh,
  avg_temp_thresh,
  high_predation,
  contact_points,
  prop_diverted,
  total_diverted,
  ..surv_juv_delta_int = lateFallRunDSM::params$..surv_juv_delta_int,
  .avg_temp_thresh = lateFallRunDSM::params$.surv_juv_delta_avg_temp_thresh,
  .high_predation = lateFallRunDSM::params$.surv_juv_delta_high_predation,
 
    .surv_juv_delta_contact_points = lateFallRunDSM::params$.surv_juv_delta_contact_points,
 
    ..surv_juv_delta_contact_points = lateFallRunDSM::params$..surv_juv_delta_contact_points,
  .prop_diverted = lateFallRunDSM::params$.surv_juv_delta_prop_diverted,
 
    .surv_juv_delta_total_diverted = lateFallRunDSM::params$.surv_juv_delta_total_diverted,
 
    ..surv_juv_delta_total_diverted = lateFallRunDSM::params$..surv_juv_delta_total_diverted,
  .medium = lateFallRunDSM::params$.surv_juv_delta_medium,
  .large = lateFallRunDSM::params$.surv_juv_delta_large,
  min_survival_rate = lateFallRunDSM::params$min_survival_rate,
  stochastic
)

Arguments

avg_temp	Variable representing average temperature in the delta
max_temp_thresh	Variable representing the probability of exceeding the max temperature
avg_temp_thresh	Variable representing the probability of exceeding the average temperature
high_predation	Variable representing an indicator for high predation in delta
contact_points	Variable representing the number of contact points in watershed
prop_diverted	Variable representing the proportion of water diverted
total_diverted	Variable representing the total diversions
..surv_juv_delta_int	intercept, source: calibration
.avg_temp_thresh	Coefficient for avg_temp_thresh variable
.high_predation	Coefficient for high_predation variable
.surv_juv_delta_contact_points	Coefficient for contact_points variable
..surv_juv_delta_contact_points	Calibrated coefficient for contact_points variable
.prop_diverted	Coefficient for prop_diversions variable
.surv_juv_delta_total_diverted	Coefficient for total_diversions variable
..surv_juv_delta_total_diverted	Calibrated coefficient for total_diversions variable
.medium	size related intercept for medium sized fish
.large	size related intercept for large sized fish
min_survival_rate	estimated survival rate if temperature threshold is exceeded
stochastic	TRUE FALSE value indicating if model is being run stochastically

Details

See params for details on parameter sources

Source

IP-117068

CVPIA-OSC/lateFallRunDSM documentation built on June 30, 2022, 10:04 p.m.