route_regional: Route Regions
In CVPIA-OSC/lateFallRunDSM: Structured Decision Fall Run Model for CVPIA

route_regional

R Documentation

Route Regions

Description

Determines if juveniles stay in the region (Sections of Mainstem Sacramento River or San Joaquin River) or out migrate during a simulated month

Usage

route_regional(
  month,
  year,
  migrants,
  inchannel_habitat,
  floodplain_habitat,
  prop_pulse_flows,
  migration_survival_rate,
  proportion_flow_bypass,
  detour = NULL,
  territory_size,
  stochastic,
  ...
)

Arguments

`month`	The current simulation month, 1-8
`year`	The current simulation year, 1-20
`migrants`	An n by 4 matrix of juvenile fish by watershed and size class
`inchannel_habitat`	A vector of available habitat in square meters
`floodplain_habitat`	A vector of available floodplain habitat in square meters
`prop_pulse_flows`	The proportion of pulse flows
`migration_survival_rate`	The outmigration survival rate
`proportion_flow_bypass`	Variable describing the proportion of flows routed through the bypasses, more details at `proportion_flow_bypasses`
`detour`	Values can be 'sutter' or 'yolo' if some juveniles are detoured on to that bypass, otherwise NULL
`territory_size`	Array of juvenile fish territory requirements for `fill_regional`
`stochastic`	`TRUE` `FALSE` value indicating if model is being run stochastically