route_alternative: Route Natal Streams - Alternative
In CVPIA-OSC/lateFallRunDSM: Structured Decision Fall Run Model for CVPIA

route_alternative

R Documentation

Route Natal Streams - Alternative

Description

Determines if juveniles stay in their natal tributary, are detoured to a bypass, or out migrate during a simulated month

Usage

route_alternative(
  year,
  month,
  juveniles,
  inchannel_habitat,
  floodplain_habitat,
  prop_pulse_flows,
  .pulse_movement_intercept,
  .pulse_movement_proportion_pulse,
  .pulse_movement_medium,
  .pulse_movement_large,
  .pulse_movement_vlarge,
  .pulse_movement_medium_pulse,
  .pulse_movement_large_pulse,
  .pulse_movement_very_large_pulse,
  territory_size,
  temperature_downstream = 19,
  density_dependent_survival,
  stochastic
)

Arguments

`year`	The current simulation year, 1-20
`month`	The current simulation month, 4-11
`inchannel_habitat`	A vector of available habitat in square meters
`floodplain_habitat`	A vector of available floodplain habitat in square meters
`prop_pulse_flows`	The proportion of pulse flows
`.pulse_movement_intercept`	Intercept for `pulse_movement`
`.pulse_movement_proportion_pulse`	Coefficient for `pulse_movement` `proportion_pulse` variable
`.pulse_movement_medium`	Size related intercept for `pulse_movement` medium sized fish
`.pulse_movement_large`	Size related intercept for `pulse_movement` large sized fish
`.pulse_movement_vlarge`	Size related intercept for `pulse_movement` very large sized fish
`.pulse_movement_medium_pulse`	Additional coefficient for `pulse_movement` `proportion_pulse` variable for medium size fish
`.pulse_movement_large_pulse`	Additional coefficient for `pulse_movement` `proportion_pulse` variable for large size fish
`.pulse_movement_very_large_pulse`	Additional coefficient for `pulse_movement` `proportion_pulse` variable for very large size fish
`territory_size`	Array of juvenile fish territory requirements for `fill_natal`
`temperature_downstream`	TODO
`juvenile`	An n by 4 matrix of juvenile fish by watershed and size class
`detour`	Values can be 'sutter' or 'yolo' if some juveniles are detoured on to that bypass, otherwise NULL