loadSpectraMzML: load mzML spectra

In CeMOS-Mannheim/MALDIcellassay: Automated MALDI Cell Assays Using Dose-Response Curve Fitting

load mzML spectra

Description

load mzML spectra

Usage

loadSpectraMzML(
  Dir,
  filter = NA,
  nameSpectra = TRUE,
  verbose = TRUE,
  centroided = FALSE
)

Arguments

Dir	Character, parent directory of spectra.
filter	Character vector, filter out spectra which match the given vector.
nameSpectra	Logical, if TRUE the spectra in the resulting list will be named according to the dirname.
verbose	Logical, print logs to console
centroided	Logical, if FALSE (default) a list of MALDIquant::MassSpectrum is returned, otherwise a list of MALDIquant::MassPeaks are returned.

Value

       List of MALDIquant::MassSpectra

Examples

dataDir <- system.file("extdata", package="MALDIcellassay")

loadSpectraMzML(file.path(dataDir, "Koch2024mzML"))

CeMOS-Mannheim/MALDIcellassay documentation built on Jan. 24, 2025, 11:17 p.m.