CharlesJB/metagene: A package to produce metagene plots
This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.
Getting started
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Package details |
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| Author | Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>, Fabien Claude Lamaze <fabien.lamaze.1@ulaval.ca>, Rawane Samb <rawane.samb.1@ulaval.ca>, Cedric Lippens <lippens.cedric@protonmail>, Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> and Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>. |
| Bioconductor views | Alignment ChIPSeq Coverage Genetics MultipleComparison Sequencing |
| Maintainer | Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca> |
| License | Artistic-2.0 | file LICENSE |
| Version | 2.25.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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