Man pages for ChristopherBarrington/scviewer
A Shiny App to Display Single-Cell -Seq Datasets
| add_all_projections | Calculate tSNE and UMAP projections in 2- and 3-dimensions |
| collect_cluster_identity_sets | Write cell cluster sets to a h5 file |
| create_h5_scv | Create an empty 'h5' file |
| get_config_values | Parse configuration object to get parameter values |
| get_dataset_choices | Parse configuration object to get available datasets |
| get_prioritised_value | Pluck nested values from config in order of priority |
| load_app_config | Read the configuration yaml |
| preferred_choice | Make a ranked choice |
| run_scviewer | Start scviewer |
| server | Define the server |
| seurat_to_scv | Convert a Seurat object to a scviewer-formatted 'h5' file |
| show_log_message | Do not print log messages |
| ui | Define the user interface |
| write_cell_filter_parameters | Write cell filter parameters to a h5 file |
| write_features | Write feature values to a h5 file |
| write_metadata | Write metadata to a h5 file |
| write_reductions | Write reduction information to a h5 file |
