seurat_to_scv: Convert a Seurat object to a scviewer-formatted 'h5' file
In ChristopherBarrington/scviewer: A Shiny App to Display Single-Cell -Seq Datasets
View source: R/seurat_to_scv.R
seurat_to_scv R Documentation
Convert a Seurat object to a scviewer-formatted h5 file
Description
Convert a Seurat object to a scviewer-formatted h5 file
Usage
seurat_to_scv(h5_file, seurat, recalculate_reductions = FALSE, ...)
Arguments
h5_file
Path to h5 file
seurat
Seurat object or file path from which an rds can be read
recalculate_reductions
Should 2D and 3D tSNE and UMAP reductions be calculated?
...
Arguments passed to add_all_projections
ChristopherBarrington/scviewer documentation built on June 30, 2023, 5:34 p.m.
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View source: R/seurat_to_scv.R
| seurat_to_scv | R Documentation |
Convert a Seurat object to a scviewer-formatted h5 file
Description
Convert a Seurat object to a scviewer-formatted h5 file
Usage
seurat_to_scv(h5_file, seurat, recalculate_reductions = FALSE, ...)
Arguments
h5_file |
Path to |
seurat |
Seurat object or file path from which an |
recalculate_reductions |
Should 2D and 3D tSNE and UMAP reductions be calculated? |
... |
Arguments passed to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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