add_all_projections: Calculate tSNE and UMAP projections in 2- and 3-dimensions

In ChristopherBarrington/scviewer: A Shiny App to Display Single-Cell -Seq Datasets

Calculate tSNE and UMAP projections in 2- and 3-dimensions

Description

Calculate tSNE and UMAP projections in 2- and 3-dimensions

Calculate tSNE in 2-dimensions

Calculate UMAP in 2-dimensions

Calculate tSNE in 3-dimensions

Calculate UMAP in 3-dimensions

Usage

add_all_projections(seurat, n_dimensions = 40, input_reduction = "pca")

add_2d_tsne(seurat, n_dimensions = 40, input_reduction = "pca")

add_2d_umap(seurat, n_dimensions = 40, input_reduction = "pca")

add_3d_tsne(seurat, n_dimensions = 40, input_reduction = "pca")

add_3d_umap(seurat, n_dimensions = 40, input_reduction = "pca")

Arguments

seurat	Seurat object
n_dimensions	Number of dimensions from which the projection is calculated
input_reduction	The reduction from which the projection is calculated

Functions

• add_all_projections: Add 3D tSNE reduction to Seurat object

• add_2d_tsne: Add 2D tSNE reduction to Seurat object

• add_2d_umap: Add 3D UMAP reduction to Seurat object

• add_3d_tsne: Add 3D tSNE reduction to Seurat object

• add_3d_umap: Add 3D UMAP reduction to Seurat object

ChristopherBarrington/scviewer documentation built on June 30, 2023, 5:34 p.m.