write_features: Write feature values to a h5 file

In ChristopherBarrington/scviewer: A Shiny App to Display Single-Cell -Seq Datasets

Write feature values to a h5 file

Description

Write feature values to a h5 file

Get a feature values matrix

Usage

write_features(h5_file, feature_types, features_matrix, ..., dry_run = FALSE)

guess_features_matrix(seurat, ...)

Arguments

h5_file	Path to h5 file
feature_types	A list of feature names indexed by feature type
features_matrix	Matrix of cells (rows) and features (columns)
...	Ignored
seurat	Seurat object

Details

The feature_names list uses the feature type to influence types of plot and app behaviour so should be one of those recognised by the app. Defaults to any if not specified.

Combines the RNA@data slot and any numeric meta data variables into a feature_matrix.

Functions

• write_features: Write feature matrix to h5_file

• guess_features_matrix: Create a feature values matrix using default features

ChristopherBarrington/scviewer documentation built on June 30, 2023, 5:34 p.m.