collect_cluster_identity_sets: Write cell cluster sets to a h5 file

In ChristopherBarrington/scviewer: A Shiny App to Display Single-Cell -Seq Datasets

Write cell cluster sets to a h5 file

Description

Write cell cluster sets to a h5 file

Get cluster identity sets

Usage

write_cluster_identity_sets(h5_file, cluster_identity_sets, ...)

guess_cluster_identity_sets(seurat)

Arguments

h5_file	Path to h5 file
cluster_identity_sets	A data.frame of meta data
...	Arguments passed to guess_cluster_identity_sets
seurat	Seurat object

Details

Selects seurat_clusters and ⁠_snn_res⁠ variables as cluster identity sets and selects all identities by default.

Functions

• write_cluster_identity_sets: Write cluster identities list to h5 file

• guess_cluster_identity_sets: Select Seurat cluster identities

ChristopherBarrington/scviewer documentation built on June 30, 2023, 5:34 p.m.