auc_pi: Calculate area under the peak

In ClaudiaRHD/chipAnalyser: R package for rapid ChIP-seq data analysis and visualisation.

Description

Takes files in bigWig format and one file in bed format and calculates the area under the curve (peak). Returns a data.table with the results.

Usage

auc_pi(bed = NULL, bw_files = NULL, bw_path = NULL, op_dir = NULL,
  numcores = NULL)

Arguments

bed	A file in bed format. Default value is NULL.
bw_files	One or a character vector with multiple files in bigWig format. Default value is NULL.
bw_path	The path to directory where bwtool is installed on the computer. Default value is NULL.
op_dir	The path to the operation directory currently used. Default value is NULL.
numcores	Number of cores which should be used in parallelised process.Default value is NULL and will be defined as the number of available cores - 1.

ClaudiaRHD/chipAnalyser documentation built on June 18, 2020, 8:31 p.m.